Expanded versions of papers presented at the 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).
- Pairwise sequence alignment for very long sequences on GPUs
- PMS6: a fast algorithm for motif discovery
- Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps
- Accuracy and efficiency of algorithms for the demarcation of bacterial ecotypes from DNA sequence data
- Effects of rooting via out-groups on in-group topology in phylogeny
- Scaling up genome annotation using MAKER and work queue
- Mapping genomic features to functional traits through microbial whole genome sequences
- Discovering non-coding RNA elements in Drosophila 3' untranslated regions
- Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements
- Parameter discovery in stochastic biological models using simulated annealing and statistical model checking
- Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model
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