2 July 2014

Special issue published: "Computational Advances in Biology and Medicine"

International Journal of Bioinformatics Research and Applications 10(4/5) 2014

Expanded versions of papers presented at the 2nd IEEE International Conference on Computational Advances in Bio and Medical Sciences (ICCABS).
  • Pairwise sequence alignment for very long sequences on GPUs
  • PMS6: a fast algorithm for motif discovery
  • Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps
  • Accuracy and efficiency of algorithms for the demarcation of bacterial ecotypes from DNA sequence data
  • Effects of rooting via out-groups on in-group topology in phylogeny
  • Scaling up genome annotation using MAKER and work queue
  • Mapping genomic features to functional traits through microbial whole genome sequences
  • Discovering non-coding RNA elements in Drosophila 3' untranslated regions
  • Finding consensus stable local optimal structures for aligned RNA sequences and its application to discovering riboswitch elements
  • Parameter discovery in stochastic biological models using simulated annealing and statistical model checking
  • Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model

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